RnoEX6047624 @ rn6
Exon Skipping
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47722339-47723089:-
Coord C1 exon
chr10:47722883-47723089
Coord A exon
chr10:47722646-47722774
Coord C2 exon
chr10:47722339-47722443
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTCTCCACTTTTAGGAA
3' ss Score
12.25
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGACCTGTGCTGTGAGAGCGGAGCGTCTGCTGTTGGTACGCATCAATGCCTCTGGAGGCCTCATCCTCAGGATGGGAGCCATAAACCGCTGCCTGAAGCACCCTCTGGCCAGGGACACACCTGTCTGCTTGCTTGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTCTTGGACCACTTGCTCAGAGGCTTACCAGGCCTG
Seq A exon
GAATCCGGAGACAGCACTAGGCCCAGAGCAGAGGGGTCTCTGCCTGGAATCAGATGGGGTGCTAATGGTCTCACGAGGGGCATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAAGGGAAGAAG
Seq C2 exon
GTGGCTGTGTTCTTAGTGGACACAGGAGATGTCATGAGCCCAGAACTGAGCAGGGAGACAAGGGTCAAGCTCTGTGCCCTCACCATGATGCTCAGTTCGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.209 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PU(18.9=69.6)
A:
PF0226314=GBP=FE(16.5=100)
C2:
PF0226314=GBP=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTGTTGGTACGCATCA
R:
TGTCTCCCTGCTCAGTTCTGG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]