BtaEX0031630 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44118638-44123642:+
Coord C1 exon
chr15:44118638-44118754
Coord A exon
chr15:44119677-44119799
Coord C2 exon
chr15:44123526-44123642
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCGATGCTTGCCTGTTACAGATA
3' ss Score
7.93
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAACGTGTGCTGTCAACAATGGAGGCTGTGACCGCACCTGCAAGGATACTTCAACAGGGGTTCATTGCAGTTGTCCCGTCGGCTTCACGCTCCAGATGGATGGAAAGACCTGTAAAG
Seq A exon
ATATTGATGAGTGCCAGACGCGCAACGGAGGGTGTGATCATTTCTGCAGAAACACCGTGGGCAGTTTTGACTGCAGCTGCAAAAAGGGATTTAAATTATTAACAGATGAGAAGTCTTGCCAAG
Seq C2 exon
ATGTGGATGAATGCTCTCTGGATAGGACCTGTGACCACAGCTGCATCAACCACCCGGGCACCTTCACATGTGCTTGCAGCGAAGGGTACACCCTCTATGGCTTTACCCACTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573-'16-11,'16-9,18-11
Average complexity
ME(8_17-9_18[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGTGTGCTGTCAACAATGG
R:
CTCCGCAGTGGGTAAAGCCAT
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development