BtaEX0031641 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44119677-44145988:+
Coord C1 exon
chr15:44119677-44119799
Coord A exon
chr15:44130744-44130950
Coord C2 exon
chr15:44145818-44145988
Length
207 bp
Sequences
Splice sites
3' ss Seq
GCACTCTCTGGTTTCTGCAGTGT
3' ss Score
7.45
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATATTGATGAGTGCCAGACGCGCAACGGAGGGTGTGATCATTTCTGCAGAAACACCGTGGGCAGTTTTGACTGCAGCTGCAAAAAGGGATTTAAATTATTAACAGATGAGAAGTCTTGCCAAG
Seq A exon
TGTCTTGTGATCTCAGTTGCATTGTAAAGCGAACAGAGAAGCGGCTCCGGAAGGCCATCCGCACTCTCCGAAAGGCTGCCCACAGGGAGCAGCTGCACCTCCAGCTCTCAGGCGTGAACCTTGAAGTGGCTAAAAAGTCTCCCCGAACATCTGAACGCCAGATAGAGTCCTGTGCAATGGGCCAGGACCATGGAGGAAACCAGTGTG
Seq C2 exon
TCAGTTGCAGGGCTGGGACATATTATGATGGAGCACAGGAACGCTGTATTTTATGTCCAAATGGAACCTTCCAAAATGAGGAAGGGCAAATTACATGCGAACCATGTCCAAGACCAGGAAGTCCTGGGACCCTGAAGACCCCAGAAGCTTGGAATGTGTCTGAATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573_MULTIEX2-7/8=C1-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.248 C2=0.052
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF075629=NCD3G=PU(0.1=0.0)
C2:
PF075629=NCD3G=WD(100=72.4),PF076998=GCC2_GCC3=WD(100=87.9),PF075629=NCD3G=PU(13.0=10.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTGATGAGTGCCAGACGCG
R:
CCACATTCAGACACATTCCAAGC
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development