BtaEX0031642 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44130744-44148462:+
Coord C1 exon
chr15:44130744-44130950
Coord A exon
chr15:44145818-44145988
Coord C2 exon
chr15:44148295-44148462
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCATTTCCCCCTTTGGCTAGTCA
3' ss Score
5.28
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TGTCTTGTGATCTCAGTTGCATTGTAAAGCGAACAGAGAAGCGGCTCCGGAAGGCCATCCGCACTCTCCGAAAGGCTGCCCACAGGGAGCAGCTGCACCTCCAGCTCTCAGGCGTGAACCTTGAAGTGGCTAAAAAGTCTCCCCGAACATCTGAACGCCAGATAGAGTCCTGTGCAATGGGCCAGGACCATGGAGGAAACCAGTGTG
Seq A exon
TCAGTTGCAGGGCTGGGACATATTATGATGGAGCACAGGAACGCTGTATTTTATGTCCAAATGGAACCTTCCAAAATGAGGAAGGGCAAATTACATGCGAACCATGTCCAAGACCAGGAAGTCCTGGGACCCTGAAGACCCCAGAAGCTTGGAATGTGTCTGAATGTGGAG
Seq C2 exon
GTCTGTGCCAACCAGGTGAATACTCTGCAGATGGCTTCACACCCTGCCAGCCTTGTGCCCGGGGCACATTCCAGCCTGAAGCCGGCCGCACTTCCTGCTTTCCCTGTGGAGGGGGCCTCCCCACCAAACACCCTGGAGCCACTTCCTTTCAGGACTGTGAAACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573_MULTIEX2-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
PF075629=NCD3G=PU(0.1=0.0)
A:
PF075629=NCD3G=WD(100=72.4),PF076998=GCC2_GCC3=WD(100=87.9),PF075629=NCD3G=PU(13.0=10.3)
C2:
PF075629=NCD3G=PD(84.8=68.4),PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
ENSBTAT00000027416fB6176
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGAACCTTGAAGTGGCTA
R:
TCCTGAAAGGAAGTGGCTCCA
Band lengths:
250-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development