MmuEX0041335 @ mm10
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109809078-109824971:-
Coord C1 exon
chr7:109824765-109824971
Coord A exon
chr7:109810585-109810755
Coord C2 exon
chr7:109809078-109809245
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATTGTCCCCCCTTTGGCTAGTCA
3' ss Score
5.24
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTTCCTGCAATCTGAGCTGCGTGGTAAAGCGGACAGAGAAGAGACTGCGGAAAGCTCTCCGCACACTCAAGAGAGCTGCCCACAGGGAGCAGTTTCATCTGCAGCTCTCAGGCATGGACCTCGATATGGCTAAAACGCCCTCCAGAGTGTCAGGACAGCATGAAGAGACCTGTGGAGTGGGACAGGGTCATGAAGAAAGCCAGTGTG
Seq A exon
TCAGTTGCAGGGCTGGGACGTATTATGATGGATCACAAGAGCGCTGCATTTTGTGTCCAAACGGAACCTTCCAAAATGAGGAAGGACAAGTCACTTGTGAACCATGCCCAAGACCAGAAAATCTTGGGTCCCTAAAAATCTCAGAAGCCTGGAATGTGTCTGACTGTGGAG
Seq C2 exon
GCCTTTGTCAGCCAGGTGAATATTCAGCAAATGGATTTGCCCCTTGCCAGCTCTGTGCCCTGGGCACCTTTCAGCCTGATGTGGGCCGTACATCTTGCCTCTCATGCGGAGGAGGTCTTCCCACCAAACATCTGGGAGCCACTTCCTTCCAGGATTGTGAAACCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(11.7=10.0)
A:
PF076998=GCC2_GCC3=WD(100=87.9)
C2:
PF076998=GCC2_GCC3=PD(86.7=91.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTCTCCGCACACTCAAG
R:
CCCACATCAGGCTGAAAGGTG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types