MmuEX0041332 @ mm10
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109808409-109824971:-
Coord C1 exon
chr7:109824765-109824971
Coord A exon
chr7:109809078-109809245
Coord C2 exon
chr7:109808409-109808570
Length
168 bp
Sequences
Splice sites
3' ss Seq
CAGGGCCATACTCCCTGCAGGCC
3' ss Score
7.45
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTTCCTGCAATCTGAGCTGCGTGGTAAAGCGGACAGAGAAGAGACTGCGGAAAGCTCTCCGCACACTCAAGAGAGCTGCCCACAGGGAGCAGTTTCATCTGCAGCTCTCAGGCATGGACCTCGATATGGCTAAAACGCCCTCCAGAGTGTCAGGACAGCATGAAGAGACCTGTGGAGTGGGACAGGGTCATGAAGAAAGCCAGTGTG
Seq A exon
GCCTTTGTCAGCCAGGTGAATATTCAGCAAATGGATTTGCCCCTTGCCAGCTCTGTGCCCTGGGCACCTTTCAGCCTGATGTGGGCCGTACATCTTGCCTCTCATGCGGAGGAGGTCTTCCCACCAAACATCTGGGAGCCACTTCCTTCCAGGATTGTGAAACCCGAG
Seq C2 exon
TTCAATGCTCGCCTGGGCATTTCTACAACACCACCACACACCGATGTATCCGATGCCCACTAGGGACATACCAGCCTGAATTTGGAAAAAATAATTGTGTTTCCTGCCCGGGCAATACTACCACCGACTTTGATGGCTCCACCAACATAACACAGTGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-'22-23,'22-22,26-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(11.7=10.0)
A:
PF076998=GCC2_GCC3=PD(86.7=91.2)
C2:
PF076998=GCC2_GCC3=WD(100=87.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGAGCTGCGTGGTAAAGC
R:
CGGATACATCGGTGTGTGGTG
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types