HsaEX6000709 @ hg38
Exon Skipping
Gene
ENSG00000175356 | SCUBE2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr11:9029884-9047562:-
Coord C1 exon
chr11:9047356-9047562
Coord A exon
chr11:9030758-9030925
Coord C2 exon
chr11:9029884-9030045
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAGGCTATTGGTCCTTCCAGGTC
3' ss Score
6.29
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTTCTTGTGACCTGAGCTGCATCGTAAAGCGAACCGAGAAGCGGCTCCGTAAAGCCATCCGCACGCTCAGAAAGGCCGTCCACAGGGAGCAGTTTCACCTCCAGCTCTCAGGCATGAACCTCGACGTGGCTAAAAAGCCTCCCAGAACATCTGAACGCCAGGCAGAGTCCTGTGGAGTGGGCCAGGGTCATGCAGAAAACCAATGTG
Seq A exon
GTCTGTGTCAACCTGGTGAATATTCTGCAGATGGCTTTGCACCTTGCCAGCTCTGTGCCCTGGGCACGTTCCAGCCTGAAGCTGGTCGAACTTCCTGCTTCCCCTGTGGAGGAGGCCTTGCCACCAAACATCAGGGAGCTACTTCCTTTCAGGACTGTGAAACCAGAG
Seq C2 exon
TTCAATGTTCACCTGGACATTTCTACAACACCACCACTCACCGATGTATTCGTTGCCCAGTGGGAACATACCAGCCTGAATTTGGAAAAAATAATTGTGTTTCTTGCCCAGGAAATACTACGACTGACTTTGATGGCTCCACAAACATAACCCAGTGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175356-'39-60,'39-58,48-60
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=84.2)
C2:
PF076998=GCC2_GCC3=WD(100=87.3)
Main Skipping Isoform:
ENST00000309263fB6149
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAGCTGCATCGTAAAGC
R:
TACATCGGTGAGTGGTGGTGT
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains