RnoEX0078732 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174437983-174454769:-
Coord C1 exon
chr1:174454563-174454769
Coord A exon
chr1:174438657-174438824
Coord C2 exon
chr1:174437983-174438144
Length
168 bp
Sequences
Splice sites
3' ss Seq
CAGGGCCATACTCCCCGCAGGCC
3' ss Score
8.15
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTTCCTGCAATCTGAGCTGCGTGGTGAAGCGAACAGAGAAGAGGCTGCGGAAAGCTGTGCGCACACTCAAGAAGGCTGCCCACAGGGAACAGTTTCACCTGCAGCTCTCAGGCACGGACCTCGATGTGGCTAAAAAGTTTCCCCGAGTGTCGGGACAGCAGGAGGAGACCTGTGGAGTGGGCCAGGGTCGTGAAGAAAGCCAGTGTG
Seq A exon
GCCTTTGTCAGCCGGGTGAATATTCAGCAGATGGATTTGCCCCTTGCCAGCCCTGTGCCCTGGGCACCTTTCAGCCTGATGTGGGCCGTACATCTTGCCTCCCGTGTGGAGGAGGTCTTCCTACTAAGCATCTGGGAGCCACTTCCTTCCATGATTGTGAAACCAGAG
Seq C2 exon
TTCAATGTTCGCCTGGGCATTTCTACAACACCACCACACACCGATGTATCCGTTGCCCACTGGGAACATACCAGCCTGAATTTGGAAAAAATAATTGTGTTTCCTGCCCGGGAAATACTACCACCGACTTTGACGGCTCCACCAACATAACACAGTGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-'17-22,'17-21,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(10.2=8.6)
A:
PF076998=GCC2_GCC3=PD(88.1=91.2)
C2:
PF076998=GCC2_GCC3=WD(100=87.3)
Main Skipping Isoform:
ENSRNOT00000052377fB13020
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGAGCTGCGTGGTGAAG
R:
GCAACGGATACATCGGTGTGT
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]