GgaEX6036963 @ galGal3
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
NA
Coordinates
chr5:10474214-10482972:+
Coord C1 exon
chr5:10474214-10474417
Coord A exon
chr5:10481232-10481399
Coord C2 exon
chr5:10482811-10482972
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGTTCTTCCTCTAGATC
3' ss Score
11.45
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACACGTGTGATGTGCGCTGCGCCCGAAAAAAGACAGAGAAGAGGTTCCGTAAAACCATCCGAACCTTACGGAAGACGGTCAGCAGGGACCAGTTCCGCGTCCGTGTCTCTGGCATGGACCACGAAGTGGCCAGGAAGTCCCTCAAGCTGTCGGAGCCACAGCAGTCGTGCGGTGTGGGACAGATGCATGTGGGTAGCAGATGTG
Seq A exon
ATCAGTGCTCACCAGGTGAATATTCCTCTGATGGCTTCAAGCCCTGTCTGCCATGTCCCATTGGAACATACCAGCCCGAAGCTGGGCGAGTGTCCTGCTTCCCCTGCGGAGGAGGTCTGACGACAAGACACAGCAGTACGTCCTTGTTTCAGGACTGTGAGACCAAAG
Seq C2 exon
TTCAGTGTTCGCCTGGTCATTTCTACAATACGACAACTCATCGGTGTATTCGCTGCATGGTTGGGACGTACCAGCCTGAGTTTGGACAGAATTACTGTATTTCTTGCCCTGGAAATACCACTACAGATTATGACGGATCCACAAATATAACGCAGTGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=84.2)
C2:
PF076998=GCC2_GCC3=WD(100=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTAAAACCATCCGAACCT
R:
CAAACTCAGGCTGGTACGTCC
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]