BtaEX6059343 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44145818-44149360:+
Coord C1 exon
chr15:44145818-44145988
Coord A exon
chr15:44148295-44148462
Coord C2 exon
chr15:44149199-44149360
Length
168 bp
Sequences
Splice sites
3' ss Seq
TAGGGTCATTCCTCCCCCAGGTC
3' ss Score
8.56
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCAGTTGCAGGGCTGGGACATATTATGATGGAGCACAGGAACGCTGTATTTTATGTCCAAATGGAACCTTCCAAAATGAGGAAGGGCAAATTACATGCGAACCATGTCCAAGACCAGGAAGTCCTGGGACCCTGAAGACCCCAGAAGCTTGGAATGTGTCTGAATGTGGAG
Seq A exon
GTCTGTGCCAACCAGGTGAATACTCTGCAGATGGCTTCACACCCTGCCAGCCTTGTGCCCGGGGCACATTCCAGCCTGAAGCCGGCCGCACTTCCTGCTTTCCCTGTGGAGGGGGCCTCCCCACCAAACACCCTGGAGCCACTTCCTTTCAGGACTGTGAAACCAGAG
Seq C2 exon
TTCAGTGTTCACCTGGACATTTCTACAACACCACTACTCACCGATGCATTCGTTGCCCAGCAGGAACATACCAGCCAGAATTTGGAAAAAATCATTGTGTTTCCTGCCCAGGAAATACCACGACTGACTTTGATGGCTCCACAAACATAACCCAGTGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF075629=NCD3G=WD(100=72.4),PF076998=GCC2_GCC3=WD(100=87.9),PF075629=NCD3G=PU(13.0=10.3)
A:
PF075629=NCD3G=PD(84.8=68.4),PF076998=GCC2_GCC3=WD(100=84.2)
C2:
PF076998=GCC2_GCC3=WD(100=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCAGGGCTGGGACATATT
R:
CTGGCTGGTATGTTCCTGCTG
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]