GgaEX6003042 @ galGal4
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68724686-68728900:-
Coord C1 exon
chr1:68728697-68728900
Coord A exon
chr1:68727342-68727503
Coord C2 exon
chr1:68724686-68724853
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTTCTTTTCTCAGTTA
3' ss Score
9.53
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
ACACCTGTAACATTGACTGTGTTCGGAAAAGGATGGAGCAGAAGCTGCAAACTGCAATCAAAACATTGAGGAAATCTATTAATAAACAGCAATTTTACATTCAGTTTTCTGGGACAGAATATGAAGTGGCTCAGAAGCCAGCTAAAGCTACTGAAGGGCATGAAGCTTGCAGTACGGGGCAAGTGCTGCAGGATGGAAAATGCG
Seq A exon
TTACCTGCAGCACGGGCACCTTTTATAGCGGAGAACATAATCAGTGCATTCCTTGCTCACCAGGAACATACCAAGACACAGAAGGTCAACTTACCTGTGAGCCTTGCCCAAGTAATGATGGACAGGGAGTAGCGGGCGCCCGGAATGTGTCAGAATGTGGAG
Seq C2 exon
GGCAGTGTTCTCCTGGACACTATTCGTCAGATGGTTTTAAACCTTGTCGAGTCTGTCCTCTTGGTACGTATCAGCCTGAACCAGGAAGGACCCTCTGCTTTCCATGTGGTGGAGGGCTTGTGACCAAGTACGAAGGTGCTGTTTCTTTTCAAGACTGTGAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'22-29,'22-28,23-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGGAAAAGGATGGAGCA
R:
ACCAAGAGGACAGACTCGACA
Band lengths:
250-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]