BtaEX6025484 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114653231-114657390:-
Coord C1 exon
chr5:114657187-114657390
Coord A exon
chr5:114655013-114655174
Coord C2 exon
chr5:114653231-114653398
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCTCCACTTTGCCCCCGCAGTGG
3' ss Score
9.92
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACACCTGCGAGGCCGACTGCGTGCGGAGGCGAGCAGAGCAGAGCCTGCAGGCTGCCATCAAGACCCTGCGGAAGTCCCTGAGCCGGCAGCACTTCTCCGTGCAGGTCGCGGGCACCGAGTACGAGCTGGCCCAGCGGCCGGCCAAGGCGCCAGAGGGCCCGGGGACGTGCGGCCCCGGCCACACACCGCAGGACGGCAAATGCG
Seq A exon
TGGCCTGTGGGCCTGGCACCTACTTCAGCGGGGAGCCCGGCCAGTGTGTGCCGTGCCCGCCGGGGACCTACCAGGACCGGGTTGGCCAGCTCAGCTGCACACCATGCCCCAGCAGCGACGGGCTCGGCCTGGCTGGTGCCCGCAACGTATCCGAGTGCGGAG
Seq C2 exon
GCCAGTGCTCTCCAGGGTCCTTCTCCACCGACGGCTTCAGACCCTGCCAGGCCTGCCCCATGGGCACCTACCAGCCTGAACCTGGACGCACGGGCTGCTTCCCCTGTGGAGGGGGCCTGCTCACCAAGCATGAGGGCTCCGCCTCCTTCCAAGACTGTGAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGCTGCCATCAAGAC
R:
TCCAGGTTCAGGCTGGTAGG
Band lengths:
246-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]