DreEX0064621 @ danRer10
Exon Skipping
Gene
ENSDARG00000063097 | scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:ZFIN;Acc:ZDB-GENE-050302-78]
Coordinates
chr4:8910762-8912112:-
Coord C1 exon
chr4:8911906-8912112
Coord A exon
chr4:8911643-8911804
Coord C2 exon
chr4:8910762-8910929
Length
162 bp
Sequences
Splice sites
3' ss Seq
AATTTCTGTTTGTCTCCCAGTCA
3' ss Score
8.02
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
AATCATGCAACTTGGACTGCGTTCGCGAGAAAACCAAACAGCGATTACAGAACGCCATGCGCACACTAAGAAAGTCCATCAGTAAGCAACAGTTCTACATCCAGTTTTCTGGCACCGCATATGAAGTTGCCCAGCATGCTTTACGACATACGACTGAAGGAGATGAAACCTGCAGTATAGGACAGGTCTTTACCGATGGGAAGTGCG
Seq A exon
TCAGCTGCGTTGTGGGAACATTTTACAGTGGAGAACAGGAACAGTGCGTCATGTGTCCTCTTGGAACCTATCAAGACAGGGAAGGCCAGCTGTCCTGCGAGCCCTGTCCCAGAACTGAAGGACAGGGCATCGCAGGAGCCAAAAACGTCTCTGAGTGCGGAG
Seq C2 exon
GTCAGTGTCCAGCCGGTCAGTTCTCTTCTGATGGTTTCCGCCCATGCCAACCATGTCAGCTGGGCACCTTCCAGCCTGAGCCAGGCCGTGTGCTGTGTTTTCCCTGTGGCGGAGGACTCATGACTAAACACACCGGCAGCACATCATTTAGAGACTGTGAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063097-'17-22,'17-20,18-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCAACTTGGACTGCGTT
R:
GGGCGGAAACCATCAGAAGAG
Band lengths:
248-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]