GgaEX6003042 @ galGal3
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
NA
Coordinates
chr1:70745612-70749826:-
Coord C1 exon
chr1:70749623-70749826
Coord A exon
chr1:70748268-70748429
Coord C2 exon
chr1:70745612-70745779
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTTCTTTTCTCAGTTA
3' ss Score
9.53
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
ACACCTGTAACATTGACTGTGTTCGGAAAAGGATGGAGCAGAAGCTGCAAACTGCAATCAAAACATTGAGGAAATCTATTAATAAACAGCAATTTTACATTCAGTTTTCTGGGACAGAATATGAAGTGGCTCAGAAGCCAGCTAAAGCTACTGAAGGGCATGAAGCTTGCAGTACGGGGCAAGTGCTGCAGGATGGAAAATGCG
Seq A exon
TTACCTGCAGCACGGGCACCTTTTATAGCGGAGAACATAATCAGTGCATTCCTTGCTCACCAGGAACATACCAAGACACAGAAGGTCAACTTACCTGTGAGCCTTGCCCAAGTAATGATGGACAGGGAGTAGCGGGCGCCCGGAATGTGTCAGAATGTGGAG
Seq C2 exon
GGCAGTGTTCTCCTGGACACTATTCGTCAGATGGTTTTAAACCTTGTCGAGTCTGTCCTCTTGGTACGTATCAGCCTGAACCAGGAAGGACCCTCTGCTTTCCATGTGGTGGAGGGCTTGTGACCAAGTACGAAGGTGCTGTTTCTTTTCAAGACTGTGAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGGAAAAGGATGGAGCA
R:
ACCAAGAGGACAGACTCGACA
Band lengths:
250-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]