RnoEX0078723 @ rn6
Exon Skipping
Gene
ENSRNOG00000010617 | Scube1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:RGD Symbol;Acc:1309015]
Coordinates
chr7:124508823-124513241:-
Coord C1 exon
chr7:124513038-124513241
Coord A exon
chr7:124510296-124510457
Coord C2 exon
chr7:124508823-124508990
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTCTGCCTCTGCAGTAC
3' ss Score
9.04
5' ss Seq
GAGGCGAGT
5' ss Score
2.28
Exon sequences
Seq C1 exon
GCTCCTGCGAAGCAGACTGCATGCGGAAGCGTGCCGAGCAGAGCCTGCAGGCTGCCATCAAGACTCTGCGGAAGTCCATCGGCCGGCACCAGTTCTACGTCCAGGTCTCCGGCACTGAGTACGAGGTGGCCCAGCGGCCAGCCAAGGCACCGGAGGGGACCGGGACATGTGGCATAGGCCAAATACTACAGGATGGCAAGTGTG
Seq A exon
TACCATGTGCTCCTGGCACCTACTTCAGTAGTGAGCCAGGCCAATGCGTGCCGTGTGTGTCGGGAACCTACCAGGACATGGAAGGCCAGCTCAGCTGCACGCCGTGCCCCAGCAGCGAAGGGCTGGGTCTGGCTGGTGCCCGCAACGTATCCGAATGTGGAG
Seq C2 exon
GCCAGTGTTCTCCAGGCTTCTTCTCAGAGGATGGGTTCAAGCCTTGTCAGGCCTGCCCTGTGGGCACATACCAGCCTGAGCCTGGGCGTACCGGCTGCTTCCCCTGTGGAGGTGGGCTGCTCACCAAGCAGACGGGTACTGCCTCTTTCCAGGAATGTGAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010617-'27-25,'27-24,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTACGTCCAGGTCTCCG
R:
AGTACCCGTCTGCTTGGTGAG
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]