MmuEX6055296 @ mm10
Exon Skipping
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83613438-83616814:-
Coord C1 exon
chr15:83616611-83616814
Coord A exon
chr15:83614870-83615031
Coord C2 exon
chr15:83613438-83613605
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTCTGTCTCTGCAGTAC
3' ss Score
10.39
5' ss Seq
GAGGCGAGT
5' ss Score
2.28
Exon sequences
Seq C1 exon
GCACCTGCGAAGCAGACTGCATGCGGAAGCGTGCCGAGCAGAGCCTGCAAGCCGCCATCAAGATTCTGCGCAAGTCCATTGGTCGGAACCAGTTCTATGTCCAGGTCTTGGGCACTGAGTACGAGGTGGCCCAGCGGCCAGCCAAAGCACTGGAGGGAACCGGGACTTGCGGCATAGGCCAAATACTACAGGACGGCAAGTGTG
Seq A exon
TACCGTGTGCTCCTGGCACCTACTTCAGTGGTGACCCAGGCCAGTGTATGCCATGCGTGTCGGGAACCTACCAGGACATGGAAGGCCAGCTCAGCTGCACGCCATGCCCCAGCAGCGAAGGACTGGGTCTGGCTGGTGCCCGAAACGTATCCGAATGTGGAG
Seq C2 exon
GCCAGTGCTCTCCAGGCTACTTCTCAGCGGATGGGTTCAAGCCTTGCCAGGCCTGCCCTGTGGGCACATACCAGCCCGAGCCTGGGCGAACCGGCTGCTTCCCCTGTGGAGGCGGGCTGCTCACCAAACACACGGGTACCGCCTCTTTCCAGGACTGCGAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTCTTGGGCACTGAGTA
R:
GGTACCCGTGTGTTTGGTGAG
Band lengths:
244-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types