GgaEX0003390 @ galGal3
Exon Skipping
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3970951-3971817:-
Coord C1 exon
chr26:3971614-3971817
Coord A exon
chr26:3971351-3971512
Coord C2 exon
chr26:3970951-3971118
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTCCAGCCCTGGCTCTCAGTTA
3' ss Score
3.69
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCAGCTGCAACCTGCACTGCCTGCGACAGAAAGTGGAGAAAAAGCTCAAATCGGCCATCAAAGCCCTGAAGAAATCCATCAACCAGGAGAGGTTCCTGCTGCGCTTCGCTGGGATGGAGTACGAGGTGGCGAGGAAGCTGAGCGTGGCCCCGGAGCGGCAGGAGAGCTGCGGGCCGGGCCAGCAGCGCCTGGGCACCAAGTGTG
Seq A exon
TTAGCTGCTCGCAGGGAACCTATTACCACGGGCAGACGGAGCAGTGCGTCCCCTGCCCCTCTGGCACCTACCAGGAGAAGGAAGGGCAGCTCTCCTGTGACCTGTGTCCCCGCAGCGATGCGTTCGGCCCCGTGGGAGCCACCAACATCACTGGCTGCACAG
Seq C2 exon
GTCAGTGCCCCCCTGGGCAGCACTCCACCGATGGCTTCAAGCCCTGCCAGCCGTGCCCGCGTGGCTCCTACCAGCCCGAGGTGGGGCGGGCTCTCTGCTTCCCCTGCGGCGGGGGGCTGACCACCCGGCACGAGGGAGCCCTCTCCTTCCAGGACTGTGACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-'16-21,'16-19,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACGAGGTGGCGAGGAAG
R:
GGTGTCACAGTCCTGGAAGGA
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]