Special

ENSMUSG00000038677 @ mm10

Biotype
protein_coding
Gene Symbol
Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28142316-28174852:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
14
chr17:28165987-28166000
+
92.81
21.07
0
Exon Skipping
48
chr17:28158881-28158928
+
27.65
76.33
0
Exon Skipping
162
chr17:28165987-28166148
+
72.08
57.69
0
Intron Retention
187
chr17:28163858-28164044
+
13.1
85.71
0
Intron Retention
136
chr17:28164162-28164297
+
12.35
61.04
0
Intron Retention
271
chr17:28164403-28164673
+
11.99
85.82
0
Intron Retention
272
chr17:28164791-28165062
+
8.85
70.5
0
Intron Retention
205
chr17:28165222-28165426
+
10.45
76.42
0
Intron Retention
344
chr17:28165643-28165986
+
17.47
68.16
0
Intron Retention
208
chr17:28166149-28166356
+
9.95
62.43
0
Intron Retention
501
chr17:28166525-28167025
+
8.27
53.51
0
Intron Retention
421
chr17:28167708-28168128
+
12.58
74.63
0
Intron Retention
2734
chr17:28168462-28171195
+
16.9
100
0
Intron Retention
735
chr17:28156027-28156761
+
8.87
49.89
0
Intron Retention
185
chr17:28156888-28157072
+
7.89
58.02
0
Intron Retention
3622
chr17:28157190-28160811
+
9.2
62.89
0
Intron Retention
1387
chr17:28160929-28162315
+
10.59
58.58
0
Intron Retention
515
chr17:28162439-28162953
+
15.25
76.12
0
Intron Retention
661
chr17:28163071-28163731
+
13.83
70.83
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000146197 SCUBE3 1-to-1
Human hg19 ENSG00000146197 SCUBE3 1-to-1
Rat rn6 ENSRNOG00000000500 Scube3 1-to-1
Cow bosTau6 ENSBTAG00000009226 SCUBE3 1-to-1
Chicken galGal4 ENSGALG00000002675 SCUBE3 1-to-1
Chicken galGal3 ENSGALG00000002675 SCUBE3 1-to-1
Zebrafish danRer10 ENSDARG00000011490 scube3 1-to-1
Fruitfly dm6 FBgn0052373 CG32373 8-to-1