MmuEX0041341 @ mm10
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28165427-28166524:+
Coord C1 exon
chr17:28165427-28165642
Coord A exon
chr17:28165987-28166148
Coord C2 exon
chr17:28166357-28166524
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGCGGCCGACTCTCCCTCAGTCA
3' ss Score
5.74
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
CTGGCTGTGGGCTGCCTTGCCTCCGACAGCGGATGGAACGGAGGCTGAAAGGGTCCCTGAAGATGCTCAGAAAGTCCATCAACCAAGACCGGTTCCTGCTGCGTCTGGCAGGCCTTGACTATGAGCTAGCCCACAAGCCAGGCCTGGGAGCTGGGGACCGAGCAGAGCTGGTGGAGGTCTGCCGACCTGGGCAGCACCGAGCAGGCACCAAGTGTG
Seq A exon
TCAGCTGCCCGCAGGGAACGTATTACCACGGCCAGACGGAGCAGTGTGTGCCATGCCCAGCGGGCACCTTCCAGGAGAGGGAAGGGCAGCTCTCCTGCGACCTTTGCCCTGGGAGTGATGCCCATGGGCCTCTTGGAGCCACCAACGTCACCACGTGTGCAG
Seq C2 exon
GTCAGTGCCCACCTGGCCACCATTCAGGAGATGGGTTTAAGCCCTGCCAGCCATGCCCCCGGGGCACCTATCAGCCTGAAGCAGGGCGAACCCTGTGCTTCCCCTGTGGCGGAGGCCTCACCACCAAGCATGAGGGGGCAGTCTCCTTCCAGGACTGCGACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGTCCCTGAAGATGCTCA
R:
CTGCTTCAGGCTGATAGGTGC
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types