MmuEX0041341 @ mm9
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28302372-28303469:+
Coord C1 exon
chr17:28302372-28302587
Coord A exon
chr17:28302932-28303093
Coord C2 exon
chr17:28303302-28303469
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGCGGCCGACTCTCCCTCAGTCA
3' ss Score
5.74
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
CTGGCTGTGGGCTGCCTTGCCTCCGACAGCGGATGGAACGGAGGCTGAAAGGGTCCCTGAAGATGCTCAGAAAGTCCATCAACCAAGACCGGTTCCTGCTGCGTCTGGCAGGCCTTGACTATGAGCTAGCCCACAAGCCAGGCCTGGGAGCTGGGGACCGAGCAGAGCTGGTGGAGGTCTGCCGACCTGGGCAGCACCGAGCAGGCACCAAGTGTG
Seq A exon
TCAGCTGCCCGCAGGGAACGTATTACCACGGCCAGACGGAGCAGTGTGTGCCATGCCCAGCGGGCACCTTCCAGGAGAGGGAAGGGCAGCTCTCCTGCGACCTTTGCCCTGGGAGTGATGCCCATGGGCCTCTTGGAGCCACCAACGTCACCACGTGTGCAG
Seq C2 exon
GTCAGTGCCCACCTGGCCACCATTCAGGAGATGGGTTTAAGCCCTGCCAGCCATGCCCCCGGGGCACCTATCAGCCTGAAGCAGGGCGAACCCTGTGCTTCCCCTGTGGCGGAGGCCTCACCACCAAGCATGAGGGGGCAGTCTCCTTCCAGGACTGCGACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGTCCCTGAAGATGCTCA
R:
CTGCTTCAGGCTGATAGGTGC
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types