BtaEX0031645 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009226 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr23:9161244-9162342:+
Coord C1 exon
chr23:9161244-9161459
Coord A exon
chr23:9161806-9161967
Coord C2 exon
chr23:9162175-9162342
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGCGGCCGACTCTCCCTCAGTCA
3' ss Score
5.74
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
CTGGCTGTGGGCTGCCCTGCCTCCGACAGCGGATGGAACGGCGGCTAAAAGGATCCCTGAAGATGCTTAGAAAGTCCATCAACCAGGACCGCTTCCTACTGCGTCTGGCAGGCCTCGATTATGAGTTGGCCCACAAGCCAGGCCCAGTAGCTGGGGAGCGAGTTGAACCAGTGGAGGCCTGTAGGCCTGGGCAGCACCGCTCTGGGGCCAAGTGTG
Seq A exon
TCAGCTGCCCGCAGGGAACGTATTACCACGGCCAGACGGAGCAGTGTGTGCCATGCCCAGCGGGCACCTTCCAGGAGAGAGAAGGGCAGCTCTCCTGCGACCTTTGCCCTGGGAGTGATGCCCACGGGCCTCTTGGAGCCACCAACGTCACCACATGTGCAG
Seq C2 exon
GTCAGTGCTCACCTGGCCAACACTCTGCAGATGGGTTCAAGCCCTGCCAGCCGTGCCCACGTGGCACCTACCAACCTGAAGCAGGACGGACCCTGTGCTTCCCATGCGGTGGGGGCCTCACCACTAAGCATGAGGGAGCCATCTCCTTCCAAGACTGTGACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009226_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCAGGCCTCGATTATGA
R:
CTCATGCTTAGTGGTGAGGCC
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development