RnoEX0078752 @ rn6
Exon Skipping
Gene
ENSRNOG00000000500 | Scube3
Description
signal peptide, CUB domain and EGF like domain containing 3 [Source:RGD Symbol;Acc:1304880]
Coordinates
chr20:7740260-7741350:+
Coord C1 exon
chr20:7740260-7740475
Coord A exon
chr20:7740815-7740976
Coord C2 exon
chr20:7741183-7741350
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGCGGCCGACTCTCCCTCAGTCA
3' ss Score
5.74
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
CTGGCTGTGGGCTGACTTGCCTCCGACAGCGGATGGAACGAAGGCTGAAAGGGTCCCTGAAGATGCTCAGAAAGTCCATCAACCAGGACCGGTTCCTGCTGCGTCTGGCCGGCCTTGACTATGAGCTAGCCCACAAGCCAGGCCTGGCAGCTGGGGACCGAGCAGAGCTAGTGGAGGTCTGCCGACCCGGGCAGCACCGAGCAGGCACCAAGTGTG
Seq A exon
TCAGCTGCCCGCAGGGAACGTATTACCACGGCCAGACGGAGCAGTGTGTGCCATGCCCAGCGGGCACCTTCCAGGAGAGGGAAGGGCAGCTCTCCTGCGACCTTTGCCCTGGGAGTGATGCCCACGGGCCTCTTGGAGCCACCAACGTCACCACGTGTGCAG
Seq C2 exon
GTCAGTGCCCACCTGGTCAACACTCAGGGGATGGATTTAAGCCCTGCCAGCCCTGCCCACGTGGCACCTATCAGCCCGAAGCAGGACGAACCCTGTGCTTCCCCTGTGGCGGAGGCCTCACTACCAAGCACGAGGGGGCAGTCTCCTTCCAGGACTGTGACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000500_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=87.3)
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCGGATGGAACGAAGG
R:
GCTGGCAGGGCTTAAATCCAT
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]