DreEX6005391 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28309462-28316145:-
Coord C1 exon
chr7:28315984-28316145
Coord A exon
chr7:28315554-28315760
Coord C2 exon
chr7:28309462-28309632
Length
207 bp
Sequences
Splice sites
3' ss Seq
GTATCTATTGTTTCTCTCAGCAG
3' ss Score
5.55
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATAAAAGAGCCACCGAGAATGTCCAGTTCAGCTTTGTTAGCCTGCACTGTGCCTCTTCAAGCAGACAGCAACGTAGCCGGCACGGGCGGAAGGCTGGCGAGGAGGAAGGCTCCTTCATTACTGCCCAGTTTGAGCTGGATGTGAACCTGGAGGAGGTAACAG
Seq A exon
CAGAGGGCTGTGACCTGACTTGTGTTCGGCGGCGCTCTGAGAAGCGGCTTAGGAAGACCATCCGTACTCTTCGCAAGTCCATTAACCGAGAGCAGTTTCATCTACACTTTGCTGGATCAGAGTATGAACTGGCTAAGAAACTCGTCCGACCCGCTGACACACCAGATCATTGCGGCACTGGACAAATTCTGCTGGATAAAAAATGTG
Seq C2 exon
TCAAATGCAGCGTTGGCACATACTACGATGGAGAGCAGGGGAGGTGCTTTCTTTGCCCCCCTGGGACATACCAAGATGAAGAGGGGCAGGTGTCGTGTGACGTGTGCCCAGGACCCGAGGGCAGGGGAATCCCGAGAACCGCAGGAGCACGCAACATCTCAGAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-'17-24,'17-21,18-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF076998=GCC2_GCC3=WD(100=87.9),PF075629=NCD3G=PU(12.8=10.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACTGTGCCTCTTCAAG
R:
TGCACACTCTGAGATGTTGCG
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]