GgaEX6036964 @ galGal3
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
NA
Coordinates
chr5:10473714-10481399:+
Coord C1 exon
chr5:10473714-10473869
Coord A exon
chr5:10474214-10474417
Coord C2 exon
chr5:10481232-10481399
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCACCCTCGGTGCTTTTCAGACA
3' ss Score
7.17
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AGAGACATAACTCAGTAATGGAGAGCTTCCACTATGTAAACCTAACGTGCAGCTCCGGCAAGAAAGTCCATGGAGCCCTCAGTAGACTGCCTGCAACCAGAGAGATTTTTATCACTGCGGACTTTGAGCTTGAAACGAACCAGAAGGAGGTGACAG
Seq A exon
ACACGTGTGATGTGCGCTGCGCCCGAAAAAAGACAGAGAAGAGGTTCCGTAAAACCATCCGAACCTTACGGAAGACGGTCAGCAGGGACCAGTTCCGCGTCCGTGTCTCTGGCATGGACCACGAAGTGGCCAGGAAGTCCCTCAAGCTGTCGGAGCCACAGCAGTCGTGCGGTGTGGGACAGATGCATGTGGGTAGCAGATGTG
Seq C2 exon
ATCAGTGCTCACCAGGTGAATATTCCTCTGATGGCTTCAAGCCCTGTCTGCCATGTCCCATTGGAACATACCAGCCCGAAGCTGGGCGAGTGTCCTGCTTCCCCTGCGGAGGAGGTCTGACGACAAGACACAGCAGTACGTCCTTGTTTCAGGACTGTGAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'15-16,'15-15,16-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.101 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF076998=GCC2_GCC3=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAGTAATGGAGAGCTTCC
R:
ACAAGGACGTACTGCTGTGTC
Band lengths:
295-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]