RnoEX6004269 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174438657-174455273:-
Coord C1 exon
chr1:174455118-174455273
Coord A exon
chr1:174454563-174454769
Coord C2 exon
chr1:174438657-174438824
Length
207 bp
Sequences
Splice sites
3' ss Seq
GCTGTCCCCCATTTTTGCAGCTT
3' ss Score
8.25
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGAGGCACAGCTCAGTAAAAGAGAGCTTCCACTACGCAAACCTTACATGCAGCCCTGGCAAGCAAGTCCTGGGAGCCCTTGGCCGACCGAACGCCCCTAAGGAAATGTTTATCACGGTTGAGTTTGAACGGGAAACTTACCAAAAGGAGGTGACAG
Seq A exon
CTTCCTGCAATCTGAGCTGCGTGGTGAAGCGAACAGAGAAGAGGCTGCGGAAAGCTGTGCGCACACTCAAGAAGGCTGCCCACAGGGAACAGTTTCACCTGCAGCTCTCAGGCACGGACCTCGATGTGGCTAAAAAGTTTCCCCGAGTGTCGGGACAGCAGGAGGAGACCTGTGGAGTGGGCCAGGGTCGTGAAGAAAGCCAGTGTG
Seq C2 exon
GCCTTTGTCAGCCGGGTGAATATTCAGCAGATGGATTTGCCCCTTGCCAGCCCTGTGCCCTGGGCACCTTTCAGCCTGATGTGGGCCGTACATCTTGCCTCCCGTGTGGAGGAGGTCTTCCTACTAAGCATCTGGGAGCCACTTCCTTCCATGATTGTGAAACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-'16-21,'16-17,17-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(10.2=8.6)
C2:
PF076998=GCC2_GCC3=PD(88.1=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGCTTCCACTACGCAA
R:
TCATGGAAGGAAGTGGCTCCC
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]