MmuEX6013070 @ mm10
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109810585-109825474:-
Coord C1 exon
chr7:109825319-109825474
Coord A exon
chr7:109824765-109824971
Coord C2 exon
chr7:109810585-109810755
Length
207 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTCCGTTTCTGCAGCTT
3' ss Score
9.17
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGAGGCACAGCTCAGTAAAAGAGAGCTTCCAGTACGCAAACCTTACATGCAGCCCTGGCAAGCAAGTCCCGGGAGCCCTTGGCCGACTGAACGCCCCTAAGGAAATGTTTATCACGGTTGAGTTTGAACGGGAAACTTACGAAAAGGAGGTGACAG
Seq A exon
CTTCCTGCAATCTGAGCTGCGTGGTAAAGCGGACAGAGAAGAGACTGCGGAAAGCTCTCCGCACACTCAAGAGAGCTGCCCACAGGGAGCAGTTTCATCTGCAGCTCTCAGGCATGGACCTCGATATGGCTAAAACGCCCTCCAGAGTGTCAGGACAGCATGAAGAGACCTGTGGAGTGGGACAGGGTCATGAAGAAAGCCAGTGTG
Seq C2 exon
TCAGTTGCAGGGCTGGGACGTATTATGATGGATCACAAGAGCGCTGCATTTTGTGTCCAAACGGAACCTTCCAAAATGAGGAAGGACAAGTCACTTGTGAACCATGCCCAAGACCAGAAAATCTTGGGTCCCTAAAAATCTCAGAAGCCTGGAATGTGTCTGACTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-'21-21,'21-19,22-21=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.218 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(11.7=10.0)
C2:
PF076998=GCC2_GCC3=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTCCAGTACGCAAACCT
R:
ACAGTCAGACACATTCCAGGC
Band lengths:
301-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types