BtaEX0031640 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44127772-44130950:+
Coord C1 exon
chr15:44127772-44127879
Coord A exon
chr15:44130190-44130345
Coord C2 exon
chr15:44130744-44130950
Length
156 bp
Sequences
Splice sites
3' ss Seq
AATTTTGTTTCTCCATACAGAGA
3' ss Score
8.16
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AAGATGTCGCCACCGTCAGGACAAGTGTAACCTTTAAGCTAAATGAAGGCAAATGTAGTTTGAAAAAGGCTGAGCTGTTTCCTGAGGGTCTGCGACCAGTCCTCCCAG
Seq A exon
AGAAGCACAGCTCAGTAAAAGAGAGCTTCCGCTACGCAAACCTTACATGCAGCTCTGGCAAGCAAGTCCCAGGAGGCCCTGGCCGACCGAACGCCCCTAAGGAAATGTTTATCACTGTTGAGTTTGAGCTTGAAACTAACCAAAAGGAGGTGACAG
Seq C2 exon
TGTCTTGTGATCTCAGTTGCATTGTAAAGCGAACAGAGAAGCGGCTCCGGAAGGCCATCCGCACTCTCCGAAAGGCTGCCCACAGGGAGCAGCTGCACCTCCAGCTCTCAGGCGTGAACCTTGAAGTGGCTAAAAAGTCTCCCCGAACATCTGAACGCCAGATAGAGTCCTGTGCAATGGGCCAGGACCATGGAGGAAACCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573_MULTIEX2-6/8=5-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.333 C2=0.248
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF075629=NCD3G=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGTTTCCTGAGGGTCT
R:
ACTGGTTTCCTCCATGGTCCT
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development