DreEX0064629 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28315554-28318749:-
Coord C1 exon
chr7:28318645-28318749
Coord A exon
chr7:28315984-28316145
Coord C2 exon
chr7:28315554-28315760
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTAATATCTATTTACTCAGATA
3' ss Score
5.97
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTTCGGGAATCAAAACCATTGCCACATTTAAATCTGGACAGGGGAAGTGCAATCTAAAGCGGAGTCATGAAAATCTTGCACATAGCTTCAAAACTGCCCTGTCAG
Seq A exon
ATAAAAGAGCCACCGAGAATGTCCAGTTCAGCTTTGTTAGCCTGCACTGTGCCTCTTCAAGCAGACAGCAACGTAGCCGGCACGGGCGGAAGGCTGGCGAGGAGGAAGGCTCCTTCATTACTGCCCAGTTTGAGCTGGATGTGAACCTGGAGGAGGTAACAG
Seq C2 exon
CAGAGGGCTGTGACCTGACTTGTGTTCGGCGGCGCTCTGAGAAGCGGCTTAGGAAGACCATCCGTACTCTTCGCAAGTCCATTAACCGAGAGCAGTTTCATCTACACTTTGCTGGATCAGAGTATGAACTGGCTAAGAAACTCGTCCGACCCGCTGACACACCAGATCATTGCGGCACTGGACAAATTCTGCTGGATAAAAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-'15-21,'15-18,17-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.218 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGGGGAAGTGCAATC
R:
CCGCAATGATCTGGTGTGTCA
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]