GgaEX0008323 @ galGal3
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
NA
Coordinates
chr5:10472407-10474417:+
Coord C1 exon
chr5:10472407-10472514
Coord A exon
chr5:10473714-10473869
Coord C2 exon
chr5:10474214-10474417
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTAATTTTGTTCATACAGAGA
3' ss Score
6.54
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AAGATATTTCAACCATCAAGATAAGTGTAACCTTTAAATTAAATGAAGGAAAATGTAGTTTGAAAAAGACTGAGATGTTTCAAGAAGGTCTGGAACAGACGATACCAG
Seq A exon
AGAGACATAACTCAGTAATGGAGAGCTTCCACTATGTAAACCTAACGTGCAGCTCCGGCAAGAAAGTCCATGGAGCCCTCAGTAGACTGCCTGCAACCAGAGAGATTTTTATCACTGCGGACTTTGAGCTTGAAACGAACCAGAAGGAGGTGACAG
Seq C2 exon
ACACGTGTGATGTGCGCTGCGCCCGAAAAAAGACAGAGAAGAGGTTCCGTAAAACCATCCGAACCTTACGGAAGACGGTCAGCAGGGACCAGTTCCGCGTCCGTGTCTCTGGCATGGACCACGAAGTGGCCAGGAAGTCCCTCAAGCTGTCGGAGCCACAGCAGTCGTGCGGTGTGGGACAGATGCATGTGGGTAGCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'14-15,'14-14,15-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGATGTTTCAAGAAGGTCTGG
R:
CACATCTGCTACCCACATGCA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]