MmuEX0041337 @ mm9
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:116968279-116972653:-
Coord C1 exon
chr7:116972549-116972653
Coord A exon
chr7:116968833-116968988
Coord C2 exon
chr7:116968279-116968485
Length
156 bp
Sequences
Splice sites
3' ss Seq
CATTTTGTTTCTCCATACAGAGA
3' ss Score
8.86
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATGTCGTCACCGTCAGGACAAGTGTAACCTTTAAGCTAAATGAAGGCAAGTGTAGTTTGCAAAAGGCCAAGCTGTCTCCCGAGGGTCTACGACCAGCACTACCAG
Seq A exon
AGAGGCACAGCTCAGTAAAAGAGAGCTTCCAGTACGCAAACCTTACATGCAGCCCTGGCAAGCAAGTCCCGGGAGCCCTTGGCCGACTGAACGCCCCTAAGGAAATGTTTATCACGGTTGAGTTTGAACGGGAAACTTACGAAAAGGAGGTGACAG
Seq C2 exon
CTTCCTGCAATCTGAGCTGCGTGGTAAAGCGGACAGAGAAGAGACTGCGGAAAGCTCTCCGCACACTCAAGAGAGCTGCCCACAGGGAGCAGTTTCATCTGCAGCTCTCAGGCATGGACCTCGATATGGCTAAAACGCCCTCCAGAGTGTCAGGACAGCATGAAGAGACCTGTGGAGTGGGACAGGGTCATGAAGAAAGCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.101 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF076998=GCC2_GCC3=PU(11.7=10.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCAAAAGGCCAAGCTGT
R:
TTCATGACCCTGTCCCACTCC
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: