DreEX6005390 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28315984-28319728:-
Coord C1 exon
chr7:28319645-28319728
Coord A exon
chr7:28318645-28318749
Coord C2 exon
chr7:28315984-28316145
Length
105 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTCTTTCTGTTACAGGTT
3' ss Score
11.39
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGCTGAGGATTCATACACAGTGACCTGTGGCATGCCGCTGCCGTGCCACACAGGAGGACAGTGGAATGGATCATATTGCCCAG
Seq A exon
GTTCGGGAATCAAAACCATTGCCACATTTAAATCTGGACAGGGGAAGTGCAATCTAAAGCGGAGTCATGAAAATCTTGCACATAGCTTCAAAACTGCCCTGTCAG
Seq C2 exon
ATAAAAGAGCCACCGAGAATGTCCAGTTCAGCTTTGTTAGCCTGCACTGTGCCTCTTCAAGCAGACAGCAACGTAGCCGGCACGGGCGGAAGGCTGGCGAGGAGGAAGGCTCCTTCATTACTGCCCAGTTTGAGCTGGATGTGAACCTGGAGGAGGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-'14-18,'14-17,15-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGATTCATACACAGTGACC
R:
CCTCCTCCAGGTTCACATCCA
Band lengths:
238-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]