MmuEX0041336 @ mm9
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:116968833-116974394:-
Coord C1 exon
chr7:116974311-116974394
Coord A exon
chr7:116972549-116972653
Coord C2 exon
chr7:116968833-116968988
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCACTTATTTCTTTCTGAAGATG
3' ss Score
6.94
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GACTGCAAGAGGCTTACTCTGTCACCTGTGGCTCTTCCTCTCTCAGAAGCAAACAGCAAAAATCAAATGACTCTGCCTTTGGGG
Seq A exon
ATGTCGTCACCGTCAGGACAAGTGTAACCTTTAAGCTAAATGAAGGCAAGTGTAGTTTGCAAAAGGCCAAGCTGTCTCCCGAGGGTCTACGACCAGCACTACCAG
Seq C2 exon
AGAGGCACAGCTCAGTAAAAGAGAGCTTCCAGTACGCAAACCTTACATGCAGCCCTGGCAAGCAAGTCCCGGGAGCCCTTGGCCGACTGAACGCCCCTAAGGAAATGTTTATCACGGTTGAGTTTGAACGGGAAACTTACGAAAAGGAGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACTCTGTCACCTGTGGC
R:
TCACCTCCTTTTCGTAAGTTTCCC
Band lengths:
226-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: