GgaEX0008322 @ galGal3
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
NA
Coordinates
chr5:10471612-10473869:+
Coord C1 exon
chr5:10471612-10471698
Coord A exon
chr5:10472410-10472514
Coord C2 exon
chr5:10473714-10473869
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATCATTGTTTCTTTCTGAAGATA
3' ss Score
6.91
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAACACAAGATGCCTACACTCTCGCCTGTGGCAGCTCATCTCAACTTAAGAAAAAGCAGCAAAATACAAATGCATCCACTTGGCTGG
Seq A exon
ATATTTCAACCATCAAGATAAGTGTAACCTTTAAATTAAATGAAGGAAAATGTAGTTTGAAAAAGACTGAGATGTTTCAAGAAGGTCTGGAACAGACGATACCAG
Seq C2 exon
AGAGACATAACTCAGTAATGGAGAGCTTCCACTATGTAAACCTAACGTGCAGCTCCGGCAAGAAAGTCCATGGAGCCCTCAGTAGACTGCCTGCAACCAGAGAGATTTTTATCACTGCGGACTTTGAGCTTGAAACGAACCAGAAGGAGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.162 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACAAGATGCCTACACTCTCG
R:
CTGTCACCTCCTTCTGGTTCG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]