RnoEX0078743 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174454563-174462031:-
Coord C1 exon
chr1:174461909-174462031
Coord A exon
chr1:174459229-174459333
Coord C2 exon
chr1:174454563-174454769
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCACTTATTTCTTTCTGAAGATG
3' ss Score
6.94
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACACCAACGAGTGCAGCGTCAACAACGGAGGCTGCCAGCAAGTTTGCGTCAACACAGTGGGTGGCTATGAGTGCCAGTGTCATCCAGGGTACAAGCTCCACTGGAATAAAAAAGACTGTGTGG
Seq A exon
ATGTCGTCACCGTCAGGACAAGTGTAACCTTTAAGCTAAACGAAGGCAAGTGTAGTTTGCAAAAGGCCAAGCTGTCTCCCGAGGGCCTGCGACCAGCATTACCAG
Seq C2 exon
CTTCCTGCAATCTGAGCTGCGTGGTGAAGCGAACAGAGAAGAGGCTGCGGAAAGCTGTGCGCACACTCAAGAAGGCTGCCCACAGGGAACAGTTTCACCTGCAGCTCTCAGGCACGGACCTCGATGTGGCTAAAAAGTTTCCCCGAGTGTCGGGACAGCAGGAGGAGACCTGTGGAGTGGGCCAGGGTCGTGAAGAAAGCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.057
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(10.2=8.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTACAAGCTCCACTGGAA
R:
ACACTGGCTTTCTTCACGACC
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]