BtaEX0031838 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011515 | SELL
Description
selectin L [Source:HGNC Symbol;Acc:HGNC:10720]
Coordinates
chr16:38160691-38168960:-
Coord C1 exon
chr16:38168853-38168960
Coord A exon
chr16:38162749-38162934
Coord C2 exon
chr16:38160691-38160876
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTCTCATTGAAGTGA
3' ss Score
6.05
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTTCTTGTAAACCCTGGTCATGCAGCGGCCATGGACAATGTGTGGAAGTCATCAATAATTACACCTGCAACTGTGATTTGGGGTACTACGGGCCCGAGTGTCAGTTCG
Seq A exon
TGACTCAATGTGTGCCTTTGGAGGCCCCAAAGCTGGGTACCATGGCCTGCACTCACCCTTTGGGGAACTTCAGCTTCATGTCGCAGTGTGCCTTCAACTGCTCCAAGGGAACAGACATGATTGGGGTTGAAGAAACCACTTGTGCACCATTTGGAAATTGGTCATCTCCAGAACCAACCTGTCGAG
Seq C2 exon
TGATTCAATGTGAGCCTCTAACAGAACCCGATTTGGGAACCATGGACTGTAATCACCCCCTTGTCGACTTTGGCTTTTCCTCCACATGCACCTTCAGTTGTTCAGAAGAAGCTGAGTTAACTGGGGAGAAAAAAACTATCTGTGGATTGTCTGGAAATTGGTCCAGCCCTAGTCCAAGATGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011515_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=81.1)
A:
PF0008415=Sushi=WD(100=90.6)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGGACAATGTGTGGAA
R:
TGGACTAGGGCTGGACCAATT
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development