DreEX6046130 @ danRer10
Exon Skipping
Gene
ENSDARG00000009123 | sele
Description
selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
Coordinates
chr20:34071989-34072753:-
Coord C1 exon
chr20:34072562-34072753
Coord A exon
chr20:34072291-34072482
Coord C2 exon
chr20:34071989-34072174
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACTTTCACATCATTTTGCAGTTG
3' ss Score
8.76
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
TTGTTAAATGTGAACCAAATGAAGTCAATGCATTGGATCATTCTAGTAAGCAGTGCTCTCATCCTCATGGAAACTTCGCATATGACTCTCAGTGTGAATATTCATGTGAGGAGGGTTATGAACTGAAGGGTTCCAGTACAACGAGATGCAATTTTACAGCGGAGTGGACAAGCAAACCACCATCTTGTGAGC
Seq A exon
TTGTTCAATGCCCACAGCTGAACAAACCACTGAAAGGTGGCATGCAGTGTAATCATCCGATGGGTCAGTTCAGCTATCAGTCCAGCTGTGAGTTTGTGTGTGATGAAGGATACAAACTGCGAGACTCCAGCTCTTCTACTCTGATCTGTGGAGCAACGGGACACTGGAATGATTCACAGCCCACTTGTGAAA
Seq C2 exon
TAGTAAAATGCAAAGCAAAGGATATCACCCCACCAGCTCATGCTAAAGTCCACTGCACTAATGAAGATATACCCTATAAATCTCAGTGTGAATATTCCTGTGAGGAGGGTTATGAACTAAAGGGTTCAAGTACAACAACGTGCACTTCAACAACAGAGTGGTCAAGTGAACCAACAACCTGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009123-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(93.9=95.4)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCCAGTACAACGAGATGC
R:
AGGTTGTTGGTTCACTTGACCA
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]