MmuEX6028831 @ mm9
Exon Skipping
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:166058294-166062454:+
Coord C1 exon
chr1:166058294-166058479
Coord A exon
chr1:166060210-166060395
Coord C2 exon
chr1:166062269-166062454
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCATTGGTTTTTCTGTTCAGCTG
3' ss Score
8.05
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCAAGGAGTGTGGAAAAGTCAACATCCCTCAACATGTTCTCATGAACTGCAGCCATCCCCTGGGGGAGTTCTCCTTCAACTCACAGTGCACCTTCAGCTGTGCTGAGGGCTACGAGCTGGACGGACCCGGCGAGCTGCAATGTTTGGCTTCTGGGATCTGGACAAATAACCCCCCGAAGTGTGACG
Seq A exon
CTGTGCAATGTCAGAGCCTGGAAGCCCCTCCCCATGGAACCATGGCCTGTATGCACCCAATTGCTGCCTTTGCCTACGACTCCAGCTGTAAATTTGAGTGCCAGCCTGGATATAGAGCGAGGGGCTCCAACACACTCCACTGCACTGGCTCTGGTCAGTGGAGTGAACCACTGCCAACCTGTGAAG
Seq C2 exon
CTATTGCGTGTGAACCTCCGGAGATCCCCATCCATGGGAGCATGGACTGCGTCCCATCTACAGGAACCTTTGGGTACAACAGCAGCTGCACTTTTCTCTGTGCAGAGGGGTTCGTGCTGAAGGGAAATGATGCCATTCAGTGTGCTGACTCCGGGCAGTGGACAGCCCCAGCCCCATTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGGAGTTCTCCTTCAA
R:
ATTTCCCTTCAGCACGAACCC
Band lengths:
256-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: