BtaEX6068377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020755 | SELP
Description
Bos taurus selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA. [Source:RefSeq mRNA;Acc:NM_174183]
Coordinates
chr16:38068734-38074694:-
Coord C1 exon
chr16:38074509-38074694
Coord A exon
chr16:38073570-38073643
Coord C2 exon
chr16:38068734-38068919
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTTGATTCTGGCCAGCTA
3' ss Score
4.82
5' ss Seq
GCAGTGGCT
5' ss Score
-10.03
Exon sequences
Seq C1 exon
CTGTCCAGTGCCCGGCTCTGAAGTCTCCGGAGCAAGGAAGCATGAGCTGTGTCCAGTCCGCGGAAGCATTCCAGCACCAGTCCAGCTGCAGCTTCAGCTGCGAAGAGGGATTCGAATTAGTTGGGCCAGAGGTAGTGCACTGCACAGCCTTGGGGGTGTGGACAGCCCCAACTCCGGTGTGTAAAG
Seq A exon
CTATGCAGTGTGAGTTCCTGGAAGCCCCTACCAAGGGAATCCTGGACTGTGTCCATCCCCTTGTTTCCCTTGCA
Seq C2 exon
CATTGCAGTGCCAGGATCTTCCAACCTCAACTAAGGCCCGGGTGAACTGCTCGCATCCCTTTGGCGACTTTAGGTACCAGTCGACCTGTAGCTTCACCTGCGATGAAGGTTCATTCCTGGTGGGAGCAAGTGTGCTGCAATGCCTGGATACGGGGAACTGGGATGCTCCTTTTCCAGAATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020755-'7-8,'7-5,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NO
C2:
PF0008415=Sushi=WD(100=92.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACTCCGGTGTGTAAAG
R:
GTTCCCCGTATCCAGGCATTG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]