DreEX6046120 @ danRer10
Exon Skipping
Gene
ENSDARG00000042138 | selp
Description
selectin P [Source:ZFIN;Acc:ZDB-GENE-110107-2]
Coordinates
chr20:34051169-34052355:-
Coord C1 exon
chr20:34052170-34052355
Coord A exon
chr20:34051888-34052076
Coord C2 exon
chr20:34051169-34051354
Length
189 bp
Sequences
Splice sites
3' ss Seq
TAATTCTGGATTCCCCACAGCTG
3' ss Score
7.67
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGGTAAAGTGTGACTCACTGAAACCCATCGCGAACGGCTCCTACCAATGTCATGACTCTGTCGATGAGTTTTCTTATGGCTCCACTTGTTGGTTTAAATGTGATTCTGGTTTTGTCCACAATGGTACAAATTCCACTCACTGCACCAAACAGGGGAACTGGAGTCATATATCACCTATTTGTCATG
Seq A exon
CTGTACAGTGTCCTCCTCTCTCTGATACACCAAAATATGGAAGTGTGAGCTGTGTACACCCCCTGTCTACCAATAGCTACAACTCCAGCTGTGAGTTTAAGTGTGAGGAGGGTTTGGTGCTCAGAGGCACAGATTCCACTCATTGTGATCACACTGGGCACTGGACAAACACAGCACCTATTTGTACAG
Seq C2 exon
CTGTTGCTTGTGACCCTCTCGTGACCCCTGTGAATAGCAACCTGACCTGTGCCAATCCATTAGGGAAGTTCTCTTTTCGTACTTCTTGTGAGGTTATTTGTGAGGTGGGATACAAACTCAGAGGAGATACAACACTCAACTGTCTGAGTAATGGCAACTGGTCAGCACCAACGCCTGCATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042138-'10-9,'10-8,11-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=92.2)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACTCACTGCACCAAACA
R:
CTTTACATGCAGGCGTTGGTG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]