RnoEX6045150 @ rn6
Exon Skipping
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82443471-82447530:+
Coord C1 exon
chr13:82443471-82443656
Coord A exon
chr13:82445234-82445419
Coord C2 exon
chr13:82447345-82447530
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCGTTGGTTTTTCTGTTTAGCTG
3' ss Score
7.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCCAAGAGTGTGGAAAATTCGACATCCCGCAACACGTTCTCATGAACTGCAGCCACCCTCTGGGGGACTTCTCCTTCAGCTCACAGTGCACCTTCAGCTGTCCTGAGGGCTATGACCTGAACGGACCCAGTGAGATGCAATGTTTGGCCTCTGGAATCTGGACAAATAATCCCCCGCAGTGTAAAG
Seq A exon
CTGTGCAGTGCCAGAGCCTGGAAGCCCCTCTCCATGGAACCATGGACTGTACACACCCATTGGCTGCCTTTGCCTATGACTCCAGCTGTAAATTTGAGTGCCAGCCTGGATATCGGATGAGGGGCTCTGACATACTCCACTGCACTGACTCTGGTCAGTGGAGTGAACCATTGCCAACCTGTGAAG
Seq C2 exon
CCATTGCATGCGAACCGCTGGAGAGCCCCCTCCATGGGAGCATGGACTGCTTCCCATCCACAGGAGCATTCGGGTACAACAGCAGCTGCACTTTTCGCTGCACAGAGGGATTCGTGCTGATGGGAAATGATGCCATTCATTGTGCTGACTTGGGGCAGTGGACAGCCCCAGCCCCAGTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGGGGACTTCTCCTTC
R:
GAATCCCTCTGTGCAGCGAAA
Band lengths:
243-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]