RnoEX6045139 @ rn6
Exon Skipping
Gene
ENSRNOG00000002776 | Sell
Description
selectin L [Source:RGD Symbol;Acc:3655]
Coordinates
chr13:82373756-82378494:+
Coord C1 exon
chr13:82373756-82373863
Coord A exon
chr13:82376609-82376794
Coord C2 exon
chr13:82378309-82378494
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTCGCTCCATGACAGTGA
3' ss Score
5.58
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCTCCTGCCAACCAGAATCTTGCAACCGCCATGGAGAATGTGTGGAAACTATCAACAATAACACCTGCATCTGTGACCCAGGGTATTATGGGCCCCAGTGTCAGTATG
Seq A exon
TGATCCAATGTGAGCCTTTGAAGGCCCCTGAGCTGGGTACCATGAACTGTATTCACCCCTTGGGAGACTTCAGCTTCCAGTCACAGTGTGCTTTCAACTGTTCTGAGGGAAGCGAGCTACTTGGGAATGCAAAAACAGAGTGTGGAGCATCTGGAAACTGGACATATCTAGAGCCAATCTGTCAAG
Seq C2 exon
TGATTCAGTGCATGCCTCTAGCAGCACCGGATCTGGGCACTATGGAATGCAGTCACCCCCTCGCCAACTTCAGTTTTACTTCTGCTTGTACCTTCACCTGCTCAGAAGAAACTGACTTAATTGGGGAGAGAAAAACTGTCTGCAGATCATCTGGCTCCTGGTCTAGTCCTAGTCCAATATGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002776-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=86.5)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATGGAGAATGTGTGGAA
R:
CAGGAGCCAGATGATCTGCAG
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]