BtaEX0031845 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010138 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr22:50657625-50658443:-
Coord C1 exon
chr22:50658374-50658443
Coord A exon
chr22:50658151-50658295
Coord C2 exon
chr22:50657625-50657844
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACTGACATCTTCACCTGCAGCAG
3' ss Score
7.91
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGGACGTGTTCCTGTTGTCCTCGAGAGATCGCTGGACCCCACTGCTCTATGCTGTCTTCTCCACATCCAG
Seq A exon
CAGCATCTTCCAGGGTTCTGCCGTGTGCGTGTACAGCATGAATGATGTACGCCGGGCCTTCCTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCCTACCAGGGACGTGTCCCCTACCCCCGACCTGGCATG
Seq C2 exon
TGCCCCAGCAAGACTTTTGGCACCTTCAGTTCCACCAAGGACTTTCCTGATGATGTCATCCAGTTTGCCCGGAACCACCCCCTCATGTACAATTCGGTCCTGCCCATCGGTGGGCGCCCTCTCTTCCAACAAGTGGGCGCCGGGTACACCTTCACCCAGATCACTGCAGACCGTGTCGCAGCTGCTGATGGATACTACGATGTCCTCTTCATTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010138_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.2=100)
A:
PF0140314=Sema=FE(10.8=100)
C2:
PF0140314=Sema=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTCCTGTTGTCCTCGAG
R:
GACACGGTCTGCAGTGATCTG
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development