GgaEX6047728 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29795196-29795766:-
Coord C1 exon
chrUn_random:29795697-29795766
Coord A exon
chrUn_random:29795487-29795631
Coord C2 exon
chrUn_random:29795196-29795419
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGCCCCATTTCTCTCCCCAGCTC
3' ss Score
9.81
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
Seq A exon
CTCCATCTTCCAGGGCTCGGCCGTCTGCGTTTACACCATGGCCGACATCCGCCGGGCGTTCCTGGGCCCCTTTGCGCACAAGGAGGGCCCCAACTACCAGTGGGTGCCATACCAGGCGCGCGTGCCGTACCCCCGCCCGGGCATG
Seq C2 exon
TGCCCCAGCAGAACCTTCGGCACCTTCAGCTCCACCAAGGACTTCCCGGATGAGGTGATCCAGTTTGCCCGGCACCACCCACTGATGTACAACCCAGTGCTGCCCCACGGCCAGCGGCCCCTCTTCCTGCAAGCCGGCGTGCCCCACACCTTCACCCGCATCGCCGTCGACCGCGTGGCTGCCGCCGATGGCCACTACGACGTCCTCTTCATTGGCACAGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-'7-12,'7-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.7=100)
A:
PF0140314=Sema=FE(14.0=100)
C2:
PF0140314=Sema=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTATGCTGCCTTCTCCA
R:
CCTGTGCCAATGAAGAGGACG
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]