BtaEX0031869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021273 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr21:22014567-22030637:+
Coord C1 exon
chr21:22014567-22014833
Coord A exon
chr21:22028750-22028756
Coord C2 exon
chr21:22030474-22030637
Length
7 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCTTTGTGGAACCAGGCT
3' ss Score
5.82
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
GTCCGGAGGCGGGGGCGGCCGATCCAATCCGGGGCCGGACTTCGGGGCGGGGCTGCCGCCCGCGAGTGCCGGAGAGCCACCTGAGCCGAGCCCGGAGGACGCCGTCGCTCCCCGCGGTCCGAGTCCGGCTCGCCGCGATGGGCCGGGGGAGCCGAGCGTCCGCCCTGCTGGGCGCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTACCGCCGTCTCCCTCTCGGGCGCTCACCCCTCGGATCAGCCTGCCTCTCG
Seq A exon
GCTAGGG
Seq C2 exon
GCTCTGAAAAGCGACCATTCCTCAGATTTGAAGCTGAAAACGTCTTCAACTACACATCCTTCCTGCTGAGCAAGGATGGCAGGACTGTGTACGTGGGCGCTCGAGAGGCCCTCTTGGCACTCAACAGCAGCGTCAGCTTCCTGCCAGGCGGGGAGTACCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021273-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0140314=Sema=PU(16.8=67.3)
Main Inclusion Isoform:
ENSBTAT00000028346fB6231
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGATCAGCCTGCCTCTC
R:
CCATCCTTGCTCAGCAGGAAG
Band lengths:
100-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development