RnoEX0079314 @ rn6
Exon Skipping
Gene
ENSRNOG00000025167 | Sema4b
Description
semaphorin 4B [Source:RGD Symbol;Acc:1307872]
Coordinates
chr1:141986145-142000790:+
Coord C1 exon
chr1:141986145-141986322
Coord A exon
chr1:141998093-141998099
Coord C2 exon
chr1:142000627-142000790
Length
7 bp
Sequences
Splice sites
3' ss Seq
TTACCTCTTCCTGGAAGCAGGCT
3' ss Score
3.96
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACTCCACTTGAGCAACCTGAGCCGGAGGACGCCGCTCCTGCCGCGGTCCGAGCTCCACGCGCCGCGATGGGCCGGGCGAGCCGCTCCGCCGACCTGCTGAGCGCGCTGCAGCTGCTGTTGCTACTGCTGCGGACGACGACGGCGCGGGCGCTCGGCCCACGGATCAGTGTGCCGCTGG
Seq A exon
GCTGAGG
Seq C2 exon
ACTCTGAAGAAAGGCTGATTAGAAAATTTGAAGCTGAAAACATCTCCAACTACACGGCCCTTCTGCTGAGCCAAGATGGCAAGACGCTGTATGTGGGGGCCCGAGAGGCCCTCTTTGCCCTTAACAGCAACCTCAGCTTCTTGCCGGGCGGGGAGTACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025167-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0140314=Sema=PU(8.4=67.3)
Main Inclusion Isoform:
ENSRNOT00000030914fB13114
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACGGATCAGTGTGC
R:
CATCTTGGCTCAGCAGAAGGG
Band lengths:
102-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]