MmuEX0041602 @ mm9
Exon Skipping
Gene
ENSMUSG00000030539 | Sema4b
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:MGI Symbol;Acc:MGI:107559]
Coordinates
chr7:87343405-87357845:+
Coord C1 exon
chr7:87343405-87343656
Coord A exon
chr7:87355079-87355085
Coord C2 exon
chr7:87357682-87357845
Length
7 bp
Sequences
Splice sites
3' ss Seq
TTACCTCTTCCTGGAACCAGGCT
3' ss Score
6.05
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCCAGAGGCGGAGGCCGAGGGAAGGACTCCGGGCCGAACCGCGGGGCGGGGCTCCAGCCTGCGATTCCACTTGAGCAACCTGAGCCGGAGGAGGACGCCGCTGCCTGCTGCGGTCCGAGCTCCACGCGCCGCGATGGGCCGGGCGAGCCGCTCCGCTGTCCTGCGGCGCGCGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCGGACGACGACTACGCGGGCGCTCGGCCCCCGGATCAGTGTGCCGCTGG
Seq A exon
GCTGAGG
Seq C2 exon
GCTCTGAAGAAAGGCTGATTAGAAAATTTGAAGCTGAAAACATCTCCAACTACACGGCCCTTCTGCTGAGCCAGGATGGCAAGACGCTGTATGTGGGGGCCCGAGAGGCCCTCTTTGCACTTAACAGCAACCTCAGCTTCTTGCCAGGCGGGGAGTACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030539-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0140314=Sema=PU(8.4=67.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCAGTGTGCCGCTGG
R:
CATCCTGGCTCAGCAGAAGG
Band lengths:
96-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: