BtaEX0032106 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68294947-68310651:+
Coord C1 exon
chr17:68294947-68295138
Coord A exon
chr17:68306570-68306764
Coord C2 exon
chr17:68310619-68310651
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGGCTTGCGCTTCAGCGG
3' ss Score
6.34
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TCATGTACTGCACCGACCCCGGGGAAGTGGACCACTCGACCCGCTTGATTTCTGACCCTGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAACCCAGGCTTCGTGCTGGAGGGGAGCTCGCTCCTGACCTGCTACAGCCGCGAGACCGGCACCCCCATCTGGACCTCTCGCCTGCCCCACTGTGTTT
Seq A exon
CGGAGGAGTCCCTGGCCTGTGACAACCCAGGGTTGCCGGAGAACGGGTACCAGATCCTCTACAAACGACTCTACCTGCCTGGAGAGTCCCTCACCTTCATGTGCTACGAGGGCTTCGAGCTGATGGGCGAAGTGACCATTCGCTGCATCCTGGGACAGCCATCGCACTGGAACGGGCCGCTGCCCGTCTGCAAAG
Seq C2 exon
TTAATCAAGACAGCTTTGAACACGCCTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'12-18,'12-17,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTACTGCACCGACCCC
R:
AGGCGTGTTCAAAGCTGTCTT
Band lengths:
219-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development