GgaEX6014009 @ galGal4
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr15:7131873-7132889:+
Coord C1 exon
chr15:7131873-7132064
Coord A exon
chr15:7132171-7132365
Coord C2 exon
chr15:7132857-7132889
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGCTACGTGCTCCCTTCCAGCGG
3' ss Score
8.83
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTATGTACTGCACAGACCCAGGAGAGGTGGAGCACTCGACTCGCCTCATCTCCGACCCCGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAATCCTGGCTTCGTGCTGGAGGGCAGCTCACTGCTCACCTGCTACAGCCGTGAGACCGGGACTCCCATCTGGACCTCACGGCTCCCACACTGTGTCT
Seq A exon
CGGAGGAGTCTCTGGCCTGTGACAACCCAGGGCTGCCAGAAAACGGCTACCAAATCCTCTACAAACGCCTCTACCTGCCCGGCGAGTCTCTGACCTTCATGTGCTATGAGGGCTTCGAGCTCATGGGGGAGGTGACCATCAAGTGCATACTGGGACAGCCGTCGCACTGGAGTGGGCCACTGCCCATCTGCAAAG
Seq C2 exon
TCAATCAGGACAGCTTTGAGCACGCTTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCACAGACCCAGGAGAG
R:
CTTCCAAAGCGTGCTCAAAGC
Band lengths:
220-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]