RnoEX0079961 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50225775-50235013:+
Coord C1 exon
chr12:50225775-50225966
Coord A exon
chr12:50233338-50233532
Coord C2 exon
chr12:50234981-50235013
Length
195 bp
Sequences
Splice sites
3' ss Seq
CGTGTCTGCCTTCATTTCAGCCG
3' ss Score
8.15
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTATGTACTGTACTGACCCCGGGGAGGTAGAGCACTCCACCCGCCTCATCTCAGACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACACCTGTAGCCCTGGGTTTGTGCTTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCGAGACAGGAACTCCCATCTGGACGTCTCGCCTGCCCCACTGTGTCT
Seq A exon
CCGAGGAGTCCCTGGCGTGTGACAACCCAGGGCTGCCTGAAAACGGATACCAGATCCTGTATAAGCGGTTGTACCTACCCGGAGAGTCCCTCACGTTCATGTGCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGCGGGCCCCTGCCCATCTGTAAAG
Seq C2 exon
TTAACCAAGACAGTTTTGAACATGCGTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'23-26,'23-25,28-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACTGTACTGACCCCGGG
R:
TCCAACGCATGTTCAAAACTGT
Band lengths:
221-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]