BtaEX0032107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26620088-26622413:+
Coord C1 exon
chr25:26620088-26620390
Coord A exon
chr25:26621310-26621441
Coord C2 exon
chr25:26622114-26622413
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAGATGATTTCATCTCCTAGGTC
3' ss Score
6.88
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
ACACTCGGCAGCAGAGGACAGAAGAGATTGGGCAAAGAAGGGTGGGCTCCAGGCGACCCCCTACCTAGTTCTACCTCTCCGTCCCAAAGGGCAGAAAATTTGTCTCCCTTACTAACTGCTAGTAAGGGGTAAAAATTAACAAGAAAGATAAAAGGAGACGGAGGAAAGGTGACAGCTAGATTATTTAGGAGAGTCGCAGAGGAGAGAAATTGGTGTGAGTCGCCATGGGGACTCCCAGGGCCCAGCATCCGCCGCCTCCCCAGCTGCTGTTCCTATTTCTGCTGAGCTGTCCCTGGATTCAGG
Seq A exon
GTCTGCCCCTGAAGGAGGAGGAGGCATTGCCGGAGCCTGGAAGTGAGACTCCCACAGTAGCCTCTGAAGCCTTGGCAGAGCTGCTCCATGGGGCCCTGCTGAGGAAGGGCCCAGAGATGGGCTACCTGCCGG
Seq C2 exon
GATCTGATCCAGACCCCACACTAGCAACCCCTCCAGTCGGCCAGACTATTGCAGCACCCTTTCTGCCTCGGGCCACTGAGCCGGGCACAGGGCCTCTGACAACCGCCGTAACCCCTAAAGGGGGTAGGGGGGCAGGCCCCACCGCGCCAGAGCTGCTGACCCCGCCCCCAGGAACCACAGCCCCGCCCCTTCCCGGTCCCGCCTCCCCAGGCCCACCCCTGGGGCCCGAGGGAGGAGAAGAGGAGACAACGACCACCATTATCACCACGACAACTGTCACCACAACAGTGACCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.956 C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCCCAAAGGGCAGAAAAT
R:
TTGCTAGTGTGGGGTCTGGAT
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development